Welcome to AliTV’s documentation!

This will be the place for tutorials and documentation for the Alignment Toolbox and Visualization (AliTV) in the near future.

• About AliTV
• Installation
• Citation
• Tutorial I: Simple comparasion of chloroplast genomes
  • Visualizing the Whole-Genome Alignment
  • Create figure
  • Change the genome orientation
  • Set tree configurations
  • Change the genome and chromosome order
  • Filter links by identity and length
  • Change graphical parameters
• Features of AliTV
  • Main Screen
• Generating json files with alitv.pl
  • Chloroplasts
  • Bacteria
  • Chromosome 4

Indices and tables

• Index
• Search Page